IL_6NY6_040
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUGC*GCC
- Length
- 7 nucleotides
- Bulged bases
- 6NY6|1|A|U|1049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NY6_040 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.2188
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6NY6|1|A|G|1048
6NY6|1|A|U|1049
6NY6|1|A|G|1050
6NY6|1|A|C|1051
*
6NY6|1|A|G|1207
6NY6|1|A|C|1208
6NY6|1|A|C|1209
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14 type Z
- Chain Y
- Toxin YoeB
- Chain Z
- Toxin YoeB
Coloring options: