IL_6NY6_041

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6NY6|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_041 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1714

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6NY6|1|A|U|1052
6NY6|1|A|G|1053
6NY6|1|A|C|1054
6NY6|1|A|A|1055
6NY6|1|A|U|1056
*
6NY6|1|A|A|1204
6NY6|1|A|U|1205
6NY6|1|A|G|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14 type Z

Chain Y

Toxin YoeB