IL_6NY6_049

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_049 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2619

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6NY6|1|A|C|1259
6NY6|1|A|C|1260
6NY6|1|A|A|1261
6NY6|1|A|C|1262
*
6NY6|1|A|G|1273
6NY6|1|A|G|1274
6NY6|1|A|A|1275
6NY6|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S19

Chain U

30S ribosomal protein Thx