IL_6NY6_052

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_052 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.165

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6NY6|1|A|G|1401
6NY6|1|A|C|1402
6NY6|1|A|C|1403
6NY6|1|A|C|1404
*
6NY6|1|A|G|1497
6NY6|1|A|U|1498
6NY6|1|A|A|1499
6NY6|1|A|A|1500
6NY6|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains