IL_6NY6_064

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAGUUGC*GGCACUCUA

Length

16 nucleotides

Bulged bases

6NY6|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NY6|1|A|U|1122
6NY6|1|A|A|1123
6NY6|1|A|G|1124
6NY6|1|A|U|1125
6NY6|1|A|U|1126
6NY6|1|A|G|1127
6NY6|1|A|C|1128
*
6NY6|1|A|G|1143
6NY6|1|A|G|1144
6NY6|1|A|C|1145
6NY6|1|A|A|1146
6NY6|1|A|C|1147
6NY6|1|A|U|1148
6NY6|1|A|C|1149
6NY6|1|A|U|1150
6NY6|1|A|A|1151

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10