IL_6NY6_065

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CACGC*GCGAAG

Length

11 nucleotides

Bulged bases

6NY6|1|A|A|1492, 6NY6|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_065 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5626

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6NY6|1|A|C|1407
6NY6|1|A|A|1408
6NY6|1|A|C|1409
6NY6|1|A|G|1410
6NY6|1|A|C|1411
*
6NY6|1|A|G|1489
6NY6|1|A|C|1490
6NY6|1|A|G|1491
6NY6|1|A|A|1492
6NY6|1|A|A|1493
6NY6|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Y

Toxin YoeB