IL_6O3M_063

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6O3M|1|RA|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_063 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1234

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

6O3M|1|RA|G|81
6O3M|1|RA|G|82
6O3M|1|RA|G|83
6O3M|1|RA|A|84
6O3M|1|RA|G|85
*
6O3M|1|RA|C|97
6O3M|1|RA|G|98
6O3M|1|RA|U|99
6O3M|1|RA|G|101
6O3M|1|RA|G|102
6O3M|1|RA|A|103
6O3M|1|RA|U|104
6O3M|1|RA|C|105

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L29

Chain RY

50S ribosomal protein L24