IL_6O3M_105

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6O3M|1|RA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_105 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.1896

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6O3M|1|RA|G|1219
6O3M|1|RA|A|1220
6O3M|1|RA|C|1221
*
6O3M|1|RA|G|1229|||A
6O3M|1|RA|C|1230

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21