IL_6O3M_125

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6O3M|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_125 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1257

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6O3M|1|RA|C|1686
6O3M|1|RA|G|1687
6O3M|1|RA|U|1688
6O3M|1|RA|A|1689
6O3M|1|RA|A|1690
6O3M|1|RA|C|1691
*
6O3M|1|RA|G|1696
6O3M|1|RA|G|1697
6O3M|1|RA|A|1698
6O3M|1|RA|G|1699
6O3M|1|RA|A|1700
6O3M|1|RA|A|1701
6O3M|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2