IL_6O3M_138

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6O3M|1|RA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_138 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0996

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6O3M|1|RA|G|2070
6O3M|1|RA|A|2071
*
6O3M|1|RA|U|2438
6O3M|1|RA|A|2439
6O3M|1|RA|C|2440
6O3M|1|RA|C|2441

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain RD

50S ribosomal protein L2