IL_6O3M_188

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_188 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1278

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6O3M|1|XA|G|409
6O3M|1|XA|G|410
6O3M|1|XA|A|411
6O3M|1|XA|A|412
6O3M|1|XA|G|413
6O3M|1|XA|A|414
6O3M|1|XA|A|415
6O3M|1|XA|G|416
*
6O3M|1|XA|U|427
6O3M|1|XA|G|428
6O3M|1|XA|U|429
6O3M|1|XA|A|430
6O3M|1|XA|A|431
6O3M|1|XA|A|432
6O3M|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4