3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O3M_241 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.0915
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6O3M|1|YA|U|239
6O3M|1|YA|G|240
6O3M|1|YA|A|241
6O3M|1|YA|G|242
6O3M|1|YA|U|243
6O3M|1|YA|A|244
6O3M|1|YA|G|245
*
6O3M|1|YA|C|253
6O3M|1|YA|G|254
6O3M|1|YA|A|255
6O3M|1|YA|A|256
6O3M|1|YA|A|257
6O3M|1|YA|G|258

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y8
50S ribosomal protein L35
Chain YP
50S ribosomal protein L15

Coloring options:


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