IL_6O3M_252

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6O3M|1|YA|G|801, 6O3M|1|YA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_252 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1212

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6O3M|1|YA|G|674
6O3M|1|YA|A|675
6O3M|1|YA|A|676
6O3M|1|YA|A|677
6O3M|1|YA|C|678
*
6O3M|1|YA|G|799
6O3M|1|YA|A|800
6O3M|1|YA|G|801
6O3M|1|YA|A|802
6O3M|1|YA|U|803
6O3M|1|YA|A|804
6O3M|1|YA|G|805
6O3M|1|YA|C|806

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15