IL_6O3M_256

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_256 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1068

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6O3M|1|YA|G|738
6O3M|1|YA|G|739
6O3M|1|YA|U|740
6O3M|1|YA|G|741
*
6O3M|1|YA|C|756
6O3M|1|YA|U|757
6O3M|1|YA|C|758

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34