IL_6O3M_271

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_271 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.0835

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6O3M|1|YA|C|1004
6O3M|1|YA|C|1005
6O3M|1|YA|C|1006
6O3M|1|YA|C|1007
6O3M|1|YA|C|1008
6O3M|1|YA|A|1009
6O3M|1|YA|A|1010
6O3M|1|YA|G|1011
*
6O3M|1|YA|C|1150
6O3M|1|YA|G|1151

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20