IL_6O3M_275

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6O3M|1|YA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_275 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0707

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6O3M|1|YA|G|1031
6O3M|1|YA|A|1032
6O3M|1|YA|U|1033
6O3M|1|YA|G|1034
*
6O3M|1|YA|C|1121
6O3M|1|YA|G|1122
6O3M|1|YA|C|1123

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6

Chain YQ

50S ribosomal protein L16