IL_6O3M_323

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

6O3M|1|YA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_323 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.5395

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6O3M|1|YA|U|2401
6O3M|1|YA|C|2402
6O3M|1|YA|C|2403
*
6O3M|1|YA|G|2414
6O3M|1|YA|G|2415

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15