3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
GCCUGCGUAGGAUAGGUGG*CCACCCUGGC
Length
29 nucleotides
Bulged bases
6O3M|1|YA|C|2111, 6O3M|1|YA|G|2112, 6O3M|1|YA|U|2113, 6O3M|1|YA|G|2115, 6O3M|1|YA|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6O3M|1|YA|G|2106
6O3M|1|YA|C|2107
6O3M|1|YA|C|2108
6O3M|1|YA|U|2109
6O3M|1|YA|G|2110
6O3M|1|YA|C|2111
6O3M|1|YA|G|2112
6O3M|1|YA|U|2113
6O3M|1|YA|A|2114
6O3M|1|YA|G|2115
6O3M|1|YA|G|2116
6O3M|1|YA|A|2117
6O3M|1|YA|U|2118
6O3M|1|YA|A|2119
6O3M|1|YA|G|2120
6O3M|1|YA|G|2121
6O3M|1|YA|U|2122
6O3M|1|YA|G|2123
6O3M|1|YA|G|2124
*
6O3M|1|YA|C|2174
6O3M|1|YA|C|2175
6O3M|1|YA|A|2176
6O3M|1|YA|C|2177
6O3M|1|YA|C|2178
6O3M|1|YA|C|2179
6O3M|1|YA|U|2180
6O3M|1|YA|G|2181
6O3M|1|YA|G|2182
6O3M|1|YA|C|2183

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6198 s
Application loaded.