IL_6O7K_020

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O7K_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1389

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6O7K|1|g|U|409
6O7K|1|g|G|410
6O7K|1|g|A|411
6O7K|1|g|A|412
6O7K|1|g|G|413
6O7K|1|g|A|414
6O7K|1|g|A|415
6O7K|1|g|G|416
*
6O7K|1|g|U|427
6O7K|1|g|G|428
6O7K|1|g|U|429
6O7K|1|g|A|430
6O7K|1|g|A|431
6O7K|1|g|A|432
6O7K|1|g|G|433

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S4