3D structure

PDB id
6O7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CGCAG*UCAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O7K_027 not in the Motif Atlas
Homologous match to IL_5J7L_027
Geometric discrepancy: 0.1277
The information below is about IL_5J7L_027
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6O7K|1|g|C|580
6O7K|1|g|G|581
6O7K|1|g|C|582
6O7K|1|g|A|583
6O7K|1|g|G|584
*
6O7K|1|g|U|757
6O7K|1|g|C|758
6O7K|1|g|A|759
6O7K|1|g|G|760
6O7K|1|g|G|761

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain P
30S ribosomal protein S17
Chain p
30S ribosomal protein S8
Chain t
30S ribosomal protein S12
Chain u
30S ribosomal protein S15

Coloring options:


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