3D structure

PDB id
6O7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
6O7K|1|g|U|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O7K_052 not in the Motif Atlas
Geometric match to IL_4LFB_050
Geometric discrepancy: 0.1657
The information below is about IL_4LFB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6O7K|1|g|C|1158
6O7K|1|g|U|1159
6O7K|1|g|G|1160
6O7K|1|g|C|1161
*
6O7K|1|g|G|1175
6O7K|1|g|A|1176
6O7K|1|g|G|1177
6O7K|1|g|G|1178
6O7K|1|g|A|1179
6O7K|1|g|A|1180
6O7K|1|g|G|1181

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S2
Chain o
30S ribosomal protein S9

Coloring options:


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