IL_6O8W_020

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6O8W|1|A|G|841, 6O8W|1|A|G|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_020 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1737

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6O8W|1|A|G|714
6O8W|1|A|A|715
6O8W|1|A|A|716
6O8W|1|A|A|717
6O8W|1|A|C|718
*
6O8W|1|A|G|839
6O8W|1|A|A|840
6O8W|1|A|G|841
6O8W|1|A|A|842
6O8W|1|A|U|843
6O8W|1|A|A|844
6O8W|1|A|G|845
6O8W|1|A|C|846

Current chains

Chain A

50S subunit

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15