IL_6O8W_030

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

6O8W|1|A|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_030 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.4054

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6O8W|1|A|G|893
6O8W|1|A|A|894
*
6O8W|1|A|U|965
6O8W|1|A|U|966
6O8W|1|A|C|967

Current chains

Chain A

50S subunit

Nearby chains

Chain 0

50S ribosomal protein L30

Chain X

50S ribosomal protein L27