IL_6O8W_070

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_070 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.172

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6O8W|1|A|U|1865
6O8W|1|A|U|1866
6O8W|1|A|A|1867
6O8W|1|A|A|1868
6O8W|1|A|G|1869
*
6O8W|1|A|U|1901
6O8W|1|A|G|1902
6O8W|1|A|A|1903
6O8W|1|A|A|1904
6O8W|1|A|G|1905

Current chains

Chain A

50S subunit

Nearby chains

Chain C

50S ribosomal protein L2

Chain u

Transfer RNA; tRNA