IL_6O8W_096

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_096 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1985

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6O8W|1|A|A|2473
6O8W|1|A|U|2474
6O8W|1|A|C|2475
*
6O8W|1|A|G|2503
6O8W|1|A|G|2504
6O8W|1|A|U|2505
6O8W|1|A|U|2506
6O8W|1|A|U|2507

Current chains

Chain A

50S subunit

Nearby chains

Chain N

50S ribosomal protein L16