IL_6O8W_111
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GAAG*CGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6O8W_111 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.2864
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6O8W|1|A|G|2854
6O8W|1|A|A|2855
6O8W|1|A|A|2856
6O8W|1|A|G|2857
*
6O8W|1|A|C|2881
6O8W|1|A|G|2882
6O8W|1|A|G|2883
6O8W|1|A|A|2884
6O8W|1|A|C|2885
Current chains
- Chain A
- 50S subunit
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
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