IL_6O8W_132

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGAAGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

6O8W|1|a|A|427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_132 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.339

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6O8W|1|a|U|424
6O8W|1|a|G|425
6O8W|1|a|A|426
6O8W|1|a|A|427
6O8W|1|a|G|428
6O8W|1|a|A|429
6O8W|1|a|A|430
6O8W|1|a|G|431
*
6O8W|1|a|C|442
6O8W|1|a|G|443
6O8W|1|a|U|444
6O8W|1|a|A|445
6O8W|1|a|A|446
6O8W|1|a|A|447
6O8W|1|a|A|448

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4