IL_6O8X_008

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1351

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6O8X|1|A|C|241
6O8X|1|A|U|242
6O8X|1|A|G|243
6O8X|1|A|A|244
6O8X|1|A|G|245
6O8X|1|A|U|246
6O8X|1|A|A|247
6O8X|1|A|G|248
*
6O8X|1|A|C|256
6O8X|1|A|G|257
6O8X|1|A|A|258
6O8X|1|A|A|259
6O8X|1|A|A|260
6O8X|1|A|C|261
6O8X|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L35

Chain M

50S ribosomal protein L15