IL_6O8X_099

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6O8X|1|A|G|2590, 6O8X|1|A|A|2591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_099 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1808

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6O8X|1|A|C|2524
6O8X|1|A|U|2525
6O8X|1|A|C|2526
*
6O8X|1|A|G|2588
6O8X|1|A|C|2589
6O8X|1|A|G|2590
6O8X|1|A|A|2591
6O8X|1|A|G|2592

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3