IL_6O8X_167

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_167 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2634

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6O8X|1|a|C|1318
6O8X|1|a|G|1319
6O8X|1|a|G|1320
6O8X|1|a|A|1321
6O8X|1|a|U|1322
6O8X|1|a|U|1323
*
6O8X|1|a|A|1344
6O8X|1|a|U|1345
6O8X|1|a|G|1346
6O8X|1|a|A|1347
6O8X|1|a|A|1348
6O8X|1|a|G|1349

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13