IL_6O8X_183

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CCGAGG*CGUAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_183 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.3214

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6O8X|1|A|C|1392
6O8X|1|A|C|1393
6O8X|1|A|G|1394
6O8X|1|A|A|1395
6O8X|1|A|G|1396
6O8X|1|A|G|1397
*
6O8X|1|A|C|1406
6O8X|1|A|G|1407
6O8X|1|A|U|1408
6O8X|1|A|A|1409
6O8X|1|A|G|1410
6O8X|1|A|G|1411

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain Y

50S ribosomal protein L28