IL_6O8X_189

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_189 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1445

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6O8X|1|A|G|1709
6O8X|1|A|G|1710
6O8X|1|A|A|1711
6O8X|1|A|A|1712
6O8X|1|A|C|1713
6O8X|1|A|U|1714
6O8X|1|A|C|1715
6O8X|1|A|G|1716
6O8X|1|A|G|1717
*
6O8X|1|A|C|2004
6O8X|1|A|U|2005
6O8X|1|A|G|2006
6O8X|1|A|U|2007
6O8X|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14