IL_6O8Z_084

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6O8Z|1|A|A|2126, 6O8Z|1|A|A|2133

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_084 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.1865

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6O8Z|1|A|G|2124
6O8Z|1|A|U|2125
6O8Z|1|A|A|2126
6O8Z|1|A|C|2127
6O8Z|1|A|A|2128
6O8Z|1|A|G|2129
6O8Z|1|A|G|2130
6O8Z|1|A|A|2131
6O8Z|1|A|U|2132
6O8Z|1|A|A|2133
6O8Z|1|A|G|2134
*
6O8Z|1|A|C|2192
6O8Z|1|A|C|2193

Current chains

Chain A

23S rRNA

Nearby chains