IL_6O8Z_109

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUCU*AAGA

Length

8 nucleotides

Bulged bases

6O8Z|1|A|A|2813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_109 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.3307

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6O8Z|1|A|U|2806
6O8Z|1|A|U|2807
6O8Z|1|A|C|2808
6O8Z|1|A|U|2809
*
6O8Z|1|A|A|2812
6O8Z|1|A|A|2813
6O8Z|1|A|G|2814
6O8Z|1|A|A|2815

Current chains

Chain A

23S rRNA

Nearby chains