IL_6O8Z_118

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACGA*UGU

Length

7 nucleotides

Bulged bases

6O8Z|1|a|G|28

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_118 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2007

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6O8Z|1|a|A|26
6O8Z|1|a|C|27
6O8Z|1|a|G|28
6O8Z|1|a|A|29
*
6O8Z|1|a|U|567
6O8Z|1|a|G|568
6O8Z|1|a|U|569

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12