IL_6O8Z_135

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AGAAG*CGGUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_135 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.2032

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6O8Z|1|a|A|461
6O8Z|1|a|G|462
6O8Z|1|a|A|463
6O8Z|1|a|A|464
6O8Z|1|a|G|465
*
6O8Z|1|a|C|498
6O8Z|1|a|G|499
6O8Z|1|a|G|500
6O8Z|1|a|U|501
6O8Z|1|a|A|502
6O8Z|1|a|U|503

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16