IL_6O8Z_142

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUC*GAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_142 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3563

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6O8Z|1|a|G|612
6O8Z|1|a|U|613
6O8Z|1|a|C|614
*
6O8Z|1|a|G|654
6O8Z|1|a|A|655
6O8Z|1|a|A|656
6O8Z|1|a|A|657
6O8Z|1|a|C|658

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17