IL_6O8Z_186

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAUGG*UCUAG

Length

11 nucleotides

Bulged bases

6O8Z|1|A|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_186 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3863

The information below is about IL_1U6B_002

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6O8Z|1|A|C|1459
6O8Z|1|A|A|1460
6O8Z|1|A|A|1461
6O8Z|1|A|U|1462
6O8Z|1|A|G|1463
6O8Z|1|A|G|1464
*
6O8Z|1|A|U|1622
6O8Z|1|A|C|1623
6O8Z|1|A|U|1624
6O8Z|1|A|A|1625
6O8Z|1|A|G|1626

Current chains

Chain A

23S rRNA

Nearby chains