IL_6O8Z_189

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_189 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1379

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6O8Z|1|A|G|1709
6O8Z|1|A|G|1710
6O8Z|1|A|A|1711
6O8Z|1|A|A|1712
6O8Z|1|A|C|1713
6O8Z|1|A|U|1714
6O8Z|1|A|C|1715
6O8Z|1|A|G|1716
6O8Z|1|A|G|1717
*
6O8Z|1|A|C|2004
6O8Z|1|A|U|2005
6O8Z|1|A|G|2006
6O8Z|1|A|U|2007
6O8Z|1|A|C|2008

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14