IL_6O97_040

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6O97|1|1A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_040 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.1375

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6O97|1|1A|C|1043
6O97|1|1A|G|1044
6O97|1|1A|A|1045
6O97|1|1A|A|1046
6O97|1|1A|G|1047
6O97|1|1A|A|1048
6O97|1|1A|C|1049
6O97|1|1A|A|1050
6O97|1|1A|G|1051
*
6O97|1|1A|U|1108
6O97|1|1A|C|1109
6O97|1|1A|G|1110
6O97|1|1A|A|1111
6O97|1|1A|G|1112

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6