IL_6O97_298

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6O97|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_298 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1193

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6O97|1|2a|G|409
6O97|1|2a|G|410
6O97|1|2a|A|411
6O97|1|2a|A|412
6O97|1|2a|G|413
6O97|1|2a|A|414
6O97|1|2a|A|415
6O97|1|2a|G|416
*
6O97|1|2a|U|427
6O97|1|2a|G|428
6O97|1|2a|U|429
6O97|1|2a|A|430
6O97|1|2a|A|431
6O97|1|2a|A|432
6O97|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4