IL_6O97_302

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CG(PSU)GCCAG*CGGUAAUACG

Length

18 nucleotides

Bulged bases

6O97|1|2a|A|532, 6O97|1|2a|U|534, 6O97|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O97|1|2a|C|514
6O97|1|2a|G|515
6O97|1|2a|PSU|516
6O97|1|2a|G|517
6O97|1|2a|C|518
6O97|1|2a|C|519
6O97|1|2a|A|520
6O97|1|2a|G|521
*
6O97|1|2a|C|528
6O97|1|2a|G|529
6O97|1|2a|G|530
6O97|1|2a|U|531
6O97|1|2a|A|532
6O97|1|2a|A|533
6O97|1|2a|U|534
6O97|1|2a|A|535
6O97|1|2a|C|536
6O97|1|2a|G|537

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA

Chain 2w

Transfer RNA; tRNA