IL_6O97_359

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_359 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3671

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6O97|1|2A|C|2466
6O97|1|2A|C|2467
6O97|1|2A|G|2468
6O97|1|2A|A|2469
6O97|1|2A|G|2470
6O97|1|2A|C|2471
*
6O97|1|2A|G|2479
6O97|1|2A|C|2480
6O97|1|2A|G|2481
6O97|1|2A|G|2482
6O97|1|2A|C|2483
6O97|1|2A|G|2484

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16

Chain 2w

Transfer RNA; tRNA