3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6O9J|1|B|A|504, 6O9J|1|B|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O9J_016 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.094
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6O9J|1|B|G|481
6O9J|1|B|A|482
6O9J|1|B|A|483
6O9J|1|B|C|484
*
6O9J|1|B|G|496
6O9J|1|B|A|497
6O9J|1|B|G|498
6O9J|1|B|U|499
6O9J|1|B|G|500
6O9J|1|B|A|501
6O9J|1|B|A|502
6O9J|1|B|A|503
6O9J|1|B|A|504
6O9J|1|B|A|505
6O9J|1|B|G|506
6O9J|1|B|A|507
6O9J|1|B|A|508
6O9J|1|B|C|509

Current chains

Chain B
23S rRNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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