IL_6O9J_039

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6O9J|1|B|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_039 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1328

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6O9J|1|B|U|1018
6O9J|1|B|U|1019
6O9J|1|B|A|1020
6O9J|1|B|A|1021
6O9J|1|B|G|1022
6O9J|1|B|U|1023
6O9J|1|B|G|1024
*
6O9J|1|B|C|1140
6O9J|1|B|U|1141
6O9J|1|B|A|1142
6O9J|1|B|A|1143
6O9J|1|B|A|1144

Current chains

Chain B

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13