IL_6O9J_129

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

6O9J|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_129 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1702

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6O9J|1|a|U|409
6O9J|1|a|G|410
6O9J|1|a|A|411
6O9J|1|a|A|412
6O9J|1|a|G|413
6O9J|1|a|A|414
6O9J|1|a|A|415
6O9J|1|a|G|416
*
6O9J|1|a|U|427
6O9J|1|a|G|428
6O9J|1|a|U|429
6O9J|1|a|A|430
6O9J|1|a|A|431
6O9J|1|a|A|432
6O9J|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4