IL_6O9K_073

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6O9K|1|A|A|1938, 6O9K|1|A|U|1944, 6O9K|1|A|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_073 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.2113

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

6O9K|1|A|C|1934
6O9K|1|A|G|1935
6O9K|1|A|A|1936
6O9K|1|A|A|1937
6O9K|1|A|A|1938
6O9K|1|A|U|1939
6O9K|1|A|U|1940
6O9K|1|A|C|1941
6O9K|1|A|C|1942
6O9K|1|A|U|1943
6O9K|1|A|U|1944
6O9K|1|A|G|1945
*
6O9K|1|A|C|1961
6O9K|1|A|C|1962
6O9K|1|A|U|1963
6O9K|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain z

Translation initiation factor IF-2