IL_6O9K_130

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAGGGA*UCAUUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_130 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.4406

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6O9K|1|a|G|450
6O9K|1|a|A|451
6O9K|1|a|A|452
6O9K|1|a|G|453
6O9K|1|a|G|454
6O9K|1|a|G|455
6O9K|1|a|A|456
*
6O9K|1|a|U|476
6O9K|1|a|C|477
6O9K|1|a|A|478
6O9K|1|a|U|479
6O9K|1|a|U|480
6O9K|1|a|G|481
6O9K|1|a|A|482
6O9K|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16