IL_6O9K_189

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6O9K|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_189 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3347

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6O9K|1|A|C|274
6O9K|1|A|C|275
6O9K|1|A|U|276
6O9K|1|A|G|277
6O9K|1|A|A|278
6O9K|1|A|A|279
6O9K|1|A|U|280
6O9K|1|A|C|281
*
6O9K|1|A|G|359
6O9K|1|A|U|360
6O9K|1|A|G|361
6O9K|1|A|A|362
6O9K|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains