IL_6OF1_068

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6OF1|1|1A|G|1801, 6OF1|1|1A|G|1816, 6OF1|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF1_068 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0403

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6OF1|1|1A|U|1798
6OF1|1|1A|G|1799
6OF1|1|1A|C|1800
6OF1|1|1A|G|1801
6OF1|1|1A|A|1802
6OF1|1|1A|A|1803
6OF1|1|1A|C|1804
*
6OF1|1|1A|G|1813
6OF1|1|1A|G|1814
6OF1|1|1A|A|1815
6OF1|1|1A|G|1816
6OF1|1|1A|G|1817
6OF1|1|1A|U|1818
6OF1|1|1A|A|1819
6OF1|1|1A|U|1820
6OF1|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA